Quantum Time

The article “Freezing Time” published in The Scientist describes the development of extremely powerful enzyme inhibitors. Because of their vastly higher affinity for the enzyme, they can not only be used in much smaller doses for medical purposes, but persist for longer in the target enzyme but not the bloodstream: increasing effectiveness while decreasing side effects.

The trick is to create “transition state analogs”, molecules whose shape mimics that of the enzyme’s target in the moment of catalytic change. And “moment” is pretty accurate: the time scale we’re talking is a few femtoseconds – a femtosecond is 10-15 seconds, a time so short that even light wouldn’t even cross the width of a human hair.

An interesting aspect of the article is the use of computational quantum chemistry to find the right structure:

Computational quantum chemistry is used to search through thousands of possible transition states to find the one that matches the experimental observations from kinetic isotope studies. This structure is then analyzed using Schrödinger’s equation to obtain the wavefunction, which contains information about both geometry and electrostatic charge, and in fact is the most complete description that can be given of a transition state. This information provides enough of a picture, a virtual blueprint, to allow us to design analogs that mimic its geometry and electrostatic features.

This is another example of the power of quantum mechanics. Instead of sitting around talking about how “spooky” it is and speculating that there is no objective reality, these scientists actually applied quantum calculations to solve real problems in that objective reality, giving real solutions that one day should save health and lives.

(Speaking of quantum “spookiness”, I have argued that the true nature of quanta is waves and the particle aspect is the illusion – a view which resonates with the description of the wave function above.)

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Free Will Forever

By ÁWá (Own work) [GFDL (http://www.gnu.org/copyleft/fdl.html) or CC-BY-SA-3.0 (http://creativecommons.org/licenses/by-sa/3.0/)], via Wikimedia CommonsContinuing the grand tradition begun by the behaviourists of attempting to use the science of the mind to banish free will is Sam Harris’ opinion piece Free will is an illusion – and must be exposed (he also develops this theme in a recent book on the topic).

No doubt it will find a ready audience in those who like controlling other people, because making people question the efficacy of their own minds is a quick way to make them surrender their souls. Thus it is one long fallacy of self-exclusion: nowhere does Harris confess that he has no free will, that his opinions are the result of unconscious processes he cannot control, and that he doesn’t really know why he’s saying this stuff to other equally enslaved objects, except that I suppose he can’t help himself. Or perhaps he can’t help himself there, either.

Indeed, the whole exercise relies on free will – for example the ability for people to change their minds. He even notes that one of his motives is he doesn’t think justice should include vengeance, and other such things he considers (?) to be primitive (?). What meaning does any of that have, in the absence of free will? He thinks that we should not seek vengeance because vicious criminals “aren’t responsible for it” – yet in that case why should we not seek vengeance: if they aren’t responsible for their criminal acts, why is he trying to make us guilty and responsible for how we respond?

I have shown elsewhere that free will, in every sense that matters – the sense to choose your values, choose how to pursue them, and act accordingly – is inherent in having a thinking mind. And despite his surface words, Harris agrees: for the whole purpose of his writings are to convince people to change their minds and change their attitudes and actions accordingly.

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Get A Brain

Brain scanLife extension by using stem cells or cybernetics to fix or replace organs is all very well, but it doesn’t help us if our brain decays. Our memory of who we are and the processes that result in our consciousness all reside in our brains. Brain goes, we go.

So it is interesting that scientists have isolated a new progenitor cell population from two regions of the adult brain that are able to differentiate into numerous cell types including neurons.

While there’s a long way to go, the eventual ability to repair brains is going to be needed for any life extension worth having, so this is a useful step. Of course we will need to be able to repair brains while retaining those precious connections and memories – but that’s what brains do, really.

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The One True God

Gustave Doré [Public domain or Public domain], via Wikimedia CommonsI was travelling along the road to Helensvale the other day when a bright light did shine upon me from Heaven and a voice as thunder spoke to me: “Hear the words of the One True God!”

Then I was surrounded by fiery beings whose countenances shone upon me like the sun, and their touch was as flame, yet my flesh was not consumed. And lo, I was transported even unto the Seventh Heaven, where I saw sights man was not meant to see and heard voices man was not meant to hear and the Voice of God spoke unto my soul.

Then I found myself back on Earth, and only a moment had passed. Yet the visions held me, and the message I had received burned within me, and as the flesh of man cannot contain such wonders I must needs bring that vision and that message to the world.

For I had taught men that Truth was to be found in the world of the senses illuminated by Reason’s bright light, and to have Faith apart from evidence was an evil for mankind, for it is our nature to think. And the One True God had seen my words, as he sees so much, and bade me speak further. And these are His words. Listen, you  who have ears to hear!

For the One True God is our Creator. He is not a jealous God, for there are other True Gods like Him, but he is our One True God for our corner of the universe is His. It is He who pushed that ancient nebula where push were needed, and did cause our Sun to coalesce out of it, and our Earth in its place where life could flourish, and mighty Jupiter to guard us, for he is ancient and patient and wise. And out of the long slow path of life on Earth, he did reach down, and set our far ancestors on the path to Thought. He did this because Thought is the great virtue, and while our thoughts are but a dim shadow of His, yet He approves of them, for a commonwealth of thinking beings is the true end and glory of existence. Yea, we evolved, as our scientists have learned, for they too follow the path of glory. But that one push, that one spark to light the flame, was His. The One True God does not meddle or command or concern himself with the private affairs of men and women. He merely watches and waits for us to find our own path, that we may one day find Him.

But his Truth has been corrupted. False Gods came to lead men astray. The One True God allows this, for while the False Gods try to deceive, they can only deceive those who wish to be deceived, for the One True God does not allow them to use their power to force men’s obedience. And the False Gods do bribe men with promises of paradise, so that men will give up their Holy Reason to follow Faith instead, Faith in the words of these faithless false gods, that the false gods may win their souls for themselves. For Reason serves neither man nor God, but Faith is self-chosen chains binding men to slavery. This angers the One True God, and there will be a reckoning, but the One True God is patient. There is yet time, if only you heed His words.

Hear now His words. The lies of the false gods, like all good lies, are part clothed in truth. The faithless will indeed be cast out into the Outer Darkness where men will weep and gnash their teeth at the sight of the glories they have cast aside. And the faithful will indeed live forever in glory. But the faith of which I speak is keeping faith with your true nature, the nature the One True God gave you; and the faithless are those who give up their nature. And that nature is the nature of a thinking being: that glorious creature that looks at the universe with clear and honest eyes, and seeks to understand it and rule it through the power of Reason and the clarity of Thought.

For His Heaven is real and reserved for those who live by the nature He created for them: who seek truth in reality and reason, not faith in the words of false gods and their false prophets. And yea, those who live by faith, instead of paradise will receive exactly what they were promised. For the One True God is a God of Justice. But what they were promised is an eternity of grovelling servitude to their false gods and the sight of the unbelievers’ fate: and they will find, when they get it, that it is ashes in their mouths, for they will see the glory they have given up, forever beyond their reach. And as they are bound to praise their unworthy gods for all eternity, they will know their chains were forged by themselves.

The One True God asks for no service, no praise, no faith. He asks nothing but that you live by your nature as a thinking being, therefore honouring the right of others to do the same. And he offers neither reward nor punishment, only consequences. Your life will be as the life you lived and your fate will be what you have chosen for yourself. He does not even ask for your belief, for that would be contrary to reason. Such is the mystery of His truth. And verily this is the one test of the One True God: for only false gods do ask for faith.

If you would truly serve the One True God, serve Him not. But if you would know what pleases Him, his prophets are the men of reason, who follow His path while neither knowing nor caring of His existence. Therefore hold this image as your image of what you can and ought to be and can become, the words of one of those prophets: “man as a heroic being, with your own happiness as the moral purpose of your life, with productive achievement as your noblest activity, and reason as your only absolute.” Then yours will be the kingdom, the power and the glory, for ever and ever. Amen.

Too many theists have told me that being unable to prove there is no God is an excuse to believe in one, and have not understood that in our understanding of reality there is not only proved and possible: there is true, false and arbitrary. The arbitrary is that for which there is no valid evidence, and is worse than false: it is meaningless and dangerous. So to all those who say: prove my God is not real, I have only to say: prove that the One True God is not real, or know that yours is a false god leading you to destruction.

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Lies, Damned Lies and Creationism

ArchaeopteryxThis is the gist of my recent reply to a post on Objectivism Online about debating creationists, which thought might be of interest to others who encounter those pesky creatures:

Arguing with creationists – that way lies madness. Many years ago I had an extended argument with a creationist (by mail – yes, children, there was an era before email :-) ) and at one stage, I even convinced him. But then he slowly slid back and the convincing didn’t stick.

One of the problems with creationists is that the creationist literature is rife with errors. If the errors were true, then they would actually have a case! But what I found in the course of arguing, by looking up the primary literature quoted by creationist luminaries, was almost all of it was either misquoted, out of context in a way that changed the meaning, or otherwise inaccurate. Creationist “intellectuals” in general troll the literature for word bites they can use, without attempting to understand their real meaning. And the problem with that is that short of taking apart every claim, it is hard to get to a creationist: they just jump from one to another and you usually find yourself running in circles.

Unless you are dealing with a creationist actually open to having their mind changed (possible, but rare), the best you can do is point them in the direction of some of the books written by scientists that refute the creationist arguments (yes, it takes a book’s-worth, hence the impossibility of doing it verbally) for the details, and just approach it from a higher level. Things that you might find useful are:

  • Evolution is not random: the raw material (mutation, gene shuffling etc) is random but the directional accumulation is non-random via natural selection.
  • Natural selection is not a tautology: it is a direct and in fact necessary consequence of reality and causality, of the fact that organisms have to survive and reproduce in the real world, and that real world imposes conditions on what they have to do.
  • Theories are not inferior to “facts”: theories are explanatory frameworks, and can themselves be facts (e.g. the “theory” of universal gravitation).
  • Complex organs (and organisms) do not have to arise by “chance” or all at once: they arise by accumulations of smaller changes, each in itself an advantage in its own right (or at least, not a severe disadvantage – many changes actually happen by random drift). Creationists do dispute this (hence “irreducible complexity”) but:
    • In nearly all cases of alleged irreducible complexity, there are plenty of examples among living creatures or fossils that there is a sufficient range of complexity, all perfectly functional, for the change from simple to complex to have evolved naturally. Examples are the classic case of the eye (in nature, a myriad of forms of increasing complexity from pigment spots to vertebrate eyes); and the mammalian jaw (an excellent series of fossils showing how, yes, the lower jaw bones of reptiles did evolve into the single lower jaw + inner ear bones we possess, despite the apparent unlikelihood of doing that).
    • In some cases, the structure may be so ancient and/or non-fossilisable that we have no direct information like that. But “I do not know how this could have evolved” or even “I cannot believe this evolved!” is not proof that it couldn’t. Especially in the light of all the irrefutable evidence of what can and has evolved.
    • A good example, I forget where I read it, is that of an arch. It might be impossible, looking at a finished structure, to imagine how it could have been constructed piece by piece. But that doesn’t mean it wasn’t. In the case of evolution, things get mixed and matched and something that evolves for one function can be co-opted for a quite different one (many examples are known). In the case of an arch, you can build one stone by stone: you use a scaffold, then remove it when the arch is complete. Same kind of thing in evolution. Unless we have fossils, we see the end point, not the steps, and the steps that constructed that endpoint may not be obvious.
  • There are transitional fossils: so many that creationists should be embarrassed to still be creationists. The fossil record is never going to be complete (the number of fossil species identified is far less than the number alive today, which shows you the scale of the problem of getting complete evolutionary sequences), but even then it is good enough to crush creationism. Good examples are the recent findings on birds (a whole menagerie of creatures from feathered raptors to obvious birds) (Archaeopteryx alone was enough for any honest mind, but now…); the transitions from fish to amphibian, amphibians to reptiles, and reptiles to mammals; well, the list goes on and on with less grand changes, such as the evolution of aquatic whales from land-dwellers, not to mention human beings from apes.
    • In some cases, fossils with transitional forms are dated after the time when the transition must have occurred. However this is neither surprising nor a problem. For the reasons stated above – each stage in a transition is viable in its own right – it is not surprising that transitional forms live on while others of their type move on. We do after all see that all around us today. Chimps are approximately structurally transitional between monkeys and humans – they have a common ancestor with us but have diverged less from the ancestral form. But they are still here. Ditto all the way back to bacteria.
    • The “point” of such belated transitional forms is not to prove evolution occurred: but it does prove that transitional forms existed and were viable. And they are a prediction of evolutionary theory in their own right, as demonstrated above.
  • The Second Law of Thermodynamics (entropy) and (a related topic) Information Theory do not contradict evolution. Earth is not a closed system, it is bathed in sunlight which provides the bulk of the energy living things need to live, grow – and evolve. Each living thing itself goes against entropy by the fact that it not only survives but grows and develops. And yet, they are here. For the same reason.

I think that covers the bulk of the kinds of arguments creationists present. If they want to argue the details – point them to a good book. And a good book, almost by definition, is one not written by a creationist :-D

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A Theist Review

I came across an interesting review of The Australian Book of Atheism recently, from a Catholic perspective by Frank Mobbs. The review is thoughtful (he actually read the book!) but naturally critical. My fellow contributors can answer for themselves, but the comments on my chapter “Good Without God” raise some issues worth pursuing.

Mobbs does not really understand the gist of my argument, which is not an inconsistent juxtaposition of “you can’t derive an ought from an is” with “we all want to go on living so we must be rational” – but is that answering the is-ought problem is central to morality (any morality), the conditional nature of life is what answers it, and that is what makes rationality and its subsidiary virtues moral.

But the most interesting comment is one he makes not only of me but the book in general: “Repeatedly the writers assert religious faith is belief without evidence. This is sheer ignorance, for all the classical arguments for God appeal to evidence.” There are two comments we need to make on that:

  • An attempted argument from evidence doesn’t mean there actually is objective evidence. Yes, many Christians believe in God for reasons. The problem is, all their arguments are invalid. They all fail the test of inductively valid evidence (you can see my reasons for claiming that here). The simplest demonstration is that if parents did not teach innocent, trusting children that their own religion is truth, no scientifically literate person would find God in the observable facts of nature.
  • It is impossible to target every variant of religion in any brief argument. Just as one can find evidence in the Bible for any number of contradictory doctrines, so religions, sects within religions, and even finer divisions within those, will hold innumerable contradictory positions. But faith is certainly central to most religious beliefs, and despite Mobbs’ protestations, how many Christians, faced with a contradiction between their faith and the evidence of their own mind, will choose the latter?

For my own part, I am quite aware that some Christians think they have good reasons for believing in God, and that many Christians accept that one can be good without God. Unfortunately the ridiculous levels of controversy we saw over an atheist campaign to advertise that you can be good without God shows how pervasive the contrary view is, and indeed, how invested religions are with their claims to moral authority. And they are not merely concerned with the behaviour of their own adherents: whenever they have the chance, religions push for enforcing their own morality by law. That is why such claims need to be fought.

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Yay for Us!

At school we learn about the epochs of geological time where for whatever reason, the character of the Earth changes: the Cambrian, the Jurassic, the Pleistocene etc. Some scientists are now saying that we have entered a new epoch, the Anthopocene: The Age of Man. “Humanity, they contend, can be considered a geophysical force on a par with supervolcanoes, asteroid impacts, or the kinds of tectonic shift that led to the massive glaciation of the Ordovician.”

With that idea comes the question: when did it start? At what point did our influence on the planet become so large that it justifies a new era? Agriculture? Industrialisation? One proposal interesting for the sudden and unambiguous effect is “around 1945, which handily provides a marker that’s sudden, distinctive, and global: the introduction of radioactive nuclei into the environment from the first atomic-bomb tests.”

Some people of course hate the idea that humans have such power, and hate humanity for affecting the earth, as if there is any other way to live (and as if previous geological changes have not been even more dramatic in their effects). But all I can say is: Yay for us! We’ve come a long way from an obscure savannah ape shaping rocks, haven’t we?

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Life Extension Progress

Two recent advances have brought life extension closer to reality.

First, on the cloning front, scientists have finally succeeded in generating viable human embryonic stem cells from cloned cells (nuclear transfer). There is a way to go yet as the technique relied on retaining the recipient egg’s own haploid nucleus and they haven’t yet figured out how to get rid of that, but even if this particular technique proves to be a dead end itself, it gives us a valuable tool for working out how these things work and how to make therapeutic cloning a reality.

Second is another milestone on the gene therapy front: the successful reduction in the risk of uncontrolled bleeding in hemophiliacs. Some patients didn’t require any blood transfusions at all over 18 months. Again, we aren’t fully there yet, as success was variable and the holy grail of gene therapy is highly efficient, fully targeted gene replacement. But a milestone nonetheless.

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Rational Rioting

Creator Bryan Tong Minh, via Wikimedia CommonsA recent Scientific American article on the British riots claimed that “contrary to popular wisdom, mobs are not mindless. In fact, they act rationally—a characteristic that suggests ways to prevent riots.”

If you go through the reasoning, what it amounts to is: we need to stop rioting, but rioting is a response that follows from the assumptions and thinking of the rioters. In other words, the view of the articles’s author – all too common these days – is that “rationality” is just logic: rationality has nothing to do with the correctness of the assumptions upon which you operate, just how consistent your actions are with those assumptions. As if assumptions are necessarily arbitrary and subjective.

But if one recognises that reality is objective not subjective, that all things including ethics are within the reach of your thinking mind, then the last thing you would think is that rioting of the kind and for the motives indulged in by the British mobs is “rational”. The mindless destruction and the injustice of the usual riot is anti-life, because it is irrational. Rationality is not following your assumptions to their logical end: it is our primary virtue, that, as the riots show, should be used to question and validate our assumptions.

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Suicides, iPhones and Numbers

A recent New Scientist article mentioned the problem the company that makes Apple’s iPhones etc had a while ago, where they got into trouble because of a “spate” of suicides among their workers, blamed, of course, on the company.

It went on to say that the number of suicides in the year was 17, and then to mention that the company has over 1 million workers. Other newspaper stories referred to the “problem” factory having 300,000 workers!

But depending on the year, suicide rates in China average about 13-14 per annum per 100,000 people.

The articles don’t mention that. Or they do, but don’t mention the size of the factory. But surely that is the obvious question to ask: is this actually a high suicide rate? And in fact: it is significantly lower than the Chinese average.

Of course demonstrating their usual inability to think, these “high” suicide rates kicked a fuss among the brainless do-gooders in the West. As a result, the factory was “forced” by the public pressure to double salaries. And of course, that made it more sensible to increase automation (the actual thrust of the New Scientist article). So how many workers will now lose their jobs?

I wonder if the bleeding hearts will track suicides among them. Somehow I doubt it. That kind hates any whiff of capitalism. They don’t actually care about human life. After all, if they did, they would support capitalism.

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